Publications

Submitted Manuscripts / Preprints

1. Cross N, Pomares F, Uji M, Jegou A, Nguyen A, Lee K, Aydin U, Perrault A, Grova C, Dang-Vu TT, Sleep deprivation constrains dynamic reconfiguration of integrated and segregated brain states impacting cognitive performance. bioRxiv, 2025. doi: 10.1101/2025.10.21.683658.

2. Rahmati M, Moujaes F, Suljič NP, Ji JL, Berkovitch L, Lee K, Fonteneau C, Schleifer CH, Adkinson B, Savič A, Santamauro N, Tamayo Z, Diehl C, Kolobaric A, Flynn M, Camarro T, Curtis CE, Repovš G, Fineberg SK, Morgan P, Preller KH, Krystal JH, Murray JD, Cho YT, Anticevic A, Ketamine alters tuning of neural and behavioral spatial working memory precision. bioRxiv, 2025. doi: 10.1101/2025.02.10.637233. Submitted.

3. Lee K*, Wang Y*, Cross NE, Jegou A, Razavipour F, Pomares FB, Perrault AA, Nguyen A, Aydin Ü, Uji M, Abdallah C, Anticevic A, Frauscher B, Benali H, Dang-Vu TT, Grova C. NREM sleep brain networks modulate cognitive recovery from sleep deprivation. bioRxiv [Preprint]. 2024 Jul 2:2024.06.28.601285. doi: 10.1101/2024.06.28.601285. PMID: 39005401; PMCID: PMC11244911. (*: co-first).

4. Uji M, Jegou A, Cross NE, Pomares FB, Perrault AA, Nguyen A, Aydin Ü, Lee K, Abdallah C, Frauscher B, Lina J-M, Dang-Vu TT, Grova C. EEG source imaging technique to investigate sleep oscillations for simultaneous EEG-fMRI. bioRxiv, 2024. doi: 10.1101/2024.08.13.607843.

5. Razavipour SF, Ali OBK, Lee K, Grimault S, Blinder S, Soucy J-P, Benali H, Gauthier CJ, Grova C. Multiresolution metabolic profile of functional hubness in the resting human brain. 2023. Submitted.

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Submitted Abstracts / Proposals

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Publications: Peer Reviewed Journal Articles

1. Lee K, Ji JL, Helmer M, Murray JD, Krystal JH, Anticevic A. A framework for advancing mechanistic neuro-behavioral biomarkers in psychiatry. Biol Psychiatry. 2025 Oct 8:S0006-3223(25)01488-X. doi: 10.1016/j.biopsych.2025.09.013. Epub ahead of print. PMID: 41072638.

2. Berkovitch L, Lee K, Ji J, Helmer M, Rahmati M, Demsar J, Kraljic A, Matkovic A, Tamayo Z, Murray J, Repovs G, Krystal J, Martin W, Fonteneau C, Anticevic A. A common symptom geometry of mood improvement under sertraline and placebo associated with distinct neural patterns. Psychol Med. 2025 Jul 4;55:e185. doi: 10.1017/S0033291725100962. PMID: 40611472; PMCID: PMC12270277.

3. Luo X, Rechardt A, Sun G, Nejad KK, Yáñez F, Yilmaz B, Lee K, Cohen AO, Borghesani V, Pashkov A, Marinazzo D, Nicholas J, Salatiello A, Sucholutsky I, Minervini P, Razavi S, Rocca R, Yusifov E, Okalova T, Gu N, Ferianc M, Khona M, Patil KR, Lee PS, Mata R, Myers NE, Bizley JK, Musslick S, Bilgin IP, Niso G, Ales JM, Gaebler M, Ratan Murty NA, Loued-Khenissi L, Behler A, Hall CM, Dafflon J, Bao SD, Love BC. Large language models surpass human experts in predicting neuroscience results. Nat Hum Behav. 2025 Feb;9(2):305-315. doi: 10.1038/s41562-024-02046-9. Epub 2024 Nov 27. PMID: 39604572; PMCID: PMC11860209.

4. Lee K, Ji JL, Fonteneau C, Berkovitch L, Rahmati M, Pan L, Repovš G, Krystal JH, Murray JD, Anticevic A. Human brain state dynamics are highly reproducible and associated with neural and behavioral features. PLoS Biol. 2024 Sep 24;22(9):e3002808. doi: 10.1371/journal.pbio.3002808. PMID: 39316635; PMCID: PMC11421804.

5. Lee K*, Borghesani V*, de Moraes F, Olsen R, Kam JWY, Tzovara A, Badhwar A. Brain Mappers of Tomorrow: An international multilingual initiative for science dissemination. Aperture Neuro. 2024;4. doi: 10.52294/001c.123400. (*: co-first)

6. Kam JWY*, Badhwar A*, Borghesani V, Lee K, Noble S, Raamana PR, Ratnanather JT, Tan DGH, Oestreich LKL, Lee HW, Marzetti L, Nakua H, Rippon G, Olsen R, Pozzobon A, Uddin LQ, Yanes JA, Tzovara A. Creating diverse and inclusive scientific practices for research datasets and dissemination. Imaging Neurosci (Camb). 2024 Jul 12;2:imag-2-00216. doi: 10.1162/imag_a_00216. PMID: 40800266; PMCID: PMC12272200.. (*: co-first)

7. Lee K, Horien C, O’Connor D, Garand-Sheridan B, Tokoglu F, Scheinost D, Lake EMR, Constable RT. Arousal impacts distributed hubs modulating the integration of brain functional connectivity. Neuroimage. 2022 Sep;258:119364. doi: 10.1016/j.neuroimage.2022.119364. Epub 2022 Jun 9. PMID: 35690257; PMCID: PMC9341222.

8. Horien C, Lee K, Westwater ML, Noble S, Tejavibulya L, Kayani T, Constable RT, Scheinost D. A protocol for working with open-source neuroimaging datasets. STAR Protoc. 2022 Jan 8;3(1):101077. doi: 10.1016/j.xpro.2021.101077. PMID: 35036958; PMCID: PMC8749295.

9. Cross NE, Pomares FB, Nguyen A, Perrault AA, Jegou A, Uji M, Lee K, Razavipour F, Ali OBK, Aydin U, Benali H, Grova C, Dang-Vu TT. An altered balance of integrated and segregated brain activity is a marker of cognitive deficits following sleep deprivation. PLoS Biol. 2021 Nov 4;19(11):e3001232. doi: 10.1371/journal.pbio.3001232. PMID: 34735431; PMCID: PMC8568176.

10. Horien C, Noble S, Greene AS, Lee K, Barron DS, Gao S, O’Connor D, Salehi M, Dadashkarimi J, Shen X, Lake EMR, Constable RT, Scheinost D. A hitchhiker’s guide to working with large, open-source neuroimaging datasets. Nat Hum Behav. 2021 Feb;5(2):185-193. doi: 10.1038/s41562-020-01005-4. Epub 2020 Dec 7. PMID: 33288916; PMCID: PMC7992920.

11. Horien C, Fontenelle S 4th, Joseph K, Powell N, Nutor C, Fortes D, Butler M, Powell K, Macris D, Lee K, Greene AS, McPartland JC, Volkmar FR, Scheinost D, Chawarska K, Constable RT. Low-motion fMRI data can be obtained in pediatric participants undergoing a 60-minute scan protocol. Sci Rep. 2020 Dec 14;10(1):21855. doi: 10.1038/s41598-020-78885-z. PMID: 33318557; PMCID: PMC7736342.

12. Lee K, Khoo HM, Fourcade C, Gotman J, Grova C. Automatic classification and removal of structured physiological noise for resting state functional connectivity MRI analysis. Magn Reson Imaging. 2019 May;58:97-107. doi: 10.1016/j.mri.2019.01.019. Epub 2019 Jan 26. PMID: 30695721.

13. Lee K, Khoo HM, Lina JM, Dubeau F, Gotman J, Grova C. Disruption, emergence and lateralization of brain network hubs in mesial temporal lobe epilepsy. Neuroimage Clin. 2018 Jun 30;20:71-84. doi: 10.1016/j.nicl.2018.06.029. PMID: 30094158; PMCID: PMC6070692.

14. Lee K, Lina JM, Gotman J, Grova C. SPARK: Sparsity-based analysis of reliable k-hubness and overlapping network structure in brain functional connectivity. Neuroimage. 2016 Jul 1;134:434-449. doi: 10.1016/j.neuroimage.2016.03.049. Epub 2016 Apr 2. PMID: 27046111.

15. Lee YB, Lee J, Tak S, Lee K, Na DL, Seo SW, Jeong Y, Ye JC; Alzheimer’s Disease Neuroimaging Initiative. Sparse SPM: Group Sparse-dictionary learning in SPM framework for resting-state functional connectivity MRI analysis. Neuroimage. 2016 Jan 15;125:1032-1045. doi: 10.1016/j.neuroimage.2015.10.081. Epub 2015 Oct 31. PMID: 26524138.

16. Dansereau CL, Bellec P, Lee K, Pittau F, Gotman J, Grova C. Detection of abnormal resting-state networks in individual patients suffering from focal epilepsy: an initial step toward individual connectivity assessment. Front Neurosci. 2014 Dec 23;8:419. doi: 10.3389/fnins.2014.00419. PMID: 25565949; PMCID: PMC4274904.

17. Lee K, Tak S, Ye JC. A data-driven sparse GLM for fMRI analysis using sparse dictionary learning with MDL criterion. IEEE Trans Med Imaging. 2011 May;30(5):1076-89. doi: 10.1109/TMI.2010.2097275. Epub 2010 Dec 6. PMID: 21138799.

18. Tak S, Jang J, Lee K, Ye JC. Quantification of CMRO(2) without hypercapnia using simultaneous near-infrared spectroscopy and fMRI measurements. Phys Med Biol. 2010 Jun 7;55(11):3249-69. doi: 10.1088/0031-9155/55/11/017. Epub 2010 May 17. PMID: 20479515.

19. Chung YH, Lee SJ, Baek CH, Lee K, Choi Y. Characterization and optimization of a quasi-monolithic detector module with depth-encoding for small animal PET. J. Korean Phys. Soc. 2009 Jan; 54(1):244–249. Dot:10.3938/jkps.54.244.

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Publications: Proceedings Articles

1. Howell A, Cho YT, Murray JD, Anticevic A, Lee K. Dynamic structure-function coupling across intrinsic brain states reveals links to individual cognitive and behavioral outcomes. Biol Psychiatry. 2025 May; 97(9):S146. doi: 10.1016/j.biopsych.2025.02.361. Poster Presentation.

2. Chen YD, Lin C, Okolo J, Brege S, Pham P, Lee K, Ji JL, Cho YT. Cognitive-motivational phenotypes in late childhood. Biol Psychiatry. 2025 May; 97(9):S254-255. doi: 10.1016/j.biopsych.2025.02.622. Poster Presentation.

3. Brege S, Lee K, Tamayo Z, Jong TG, Anticevic A, Ulhaas P, Cho YT, Fonteneau C. Identifying neurobiological mechanisms of psychosis-risk. Biol Psychiatry. 2025 May; 97(9):S321. doi: 10.1016/j.biopsych.2025.02.780. Poster Presentation.

4. Lee K, Ji JL, Fonteneau C, Berkovitch L, Rahmati M, Pan L, Repovš G, Krystal JH, Murray JD, Anticevic A. Human brain state dynamics reflect individual neuro-phenotypes. Biol Psychiatry. 2024 May; 95(10):S53. doi: 10.1016/j.biopsych.2024.02.133.

5. Lee K, Fonteneau C, Price A, Berkovitch L, Ji JL, Tamayo Z, Afriyie-Agyemang Y, Howell A, Repovš G, Murray JD, Cho Y, Anticevic A. 450. Symptom severity of sample population impacts the reproducibility of neuro-symptom relationship in psychosis. Biol Psychiatry. 2024 May; 95(10):S284. doi: 10.1016/j.biopsych.2024.02.949.

6. Ben-Zion Z, Lee K, Fonteneau C, Liberzon I, Shalev AY, Hendler T, Levy I, Anticevic A, Harpaz-Rotem I. 41. Neurobehavioral mapping of posttraumatic stress disorder development in recent trauma survivors. Biol Psychiatry. 2024 May; 95(10):S92. doi: 10.1016/j.biopsych.2024.02.219.

7. Lin C, Fonteneau C, Lee K, Berkovitch L, Pan L, Tamayo Z, Wei X, Repovš G, Murray JD, Lui S, Gong Q, Anticevic A. 441. Mapping the neurobiological and behavioral progression of early course schizophrenia. Biol Psychiatry. 2023 May; 93(9):S273. doi: 10.1016/j.biopsych.2023.02.681.

8. Berkovitch L, Fontaneau C, Lee K, Ji JL, Demsar J, Tamayo Z, Murray JD, Repovš G, Anticevic A. 217. Mapping individually actional brain-behavior space variation across the mood spectrum. Biol Psychiatry. 2023 May; 93(9):S181. doi: 10.1016/j.biopsych.2023.02.457.

9. Lee K, Han PK, Ye JC. Sparse dictionary learning for resting-state fMRI analysis. In Wavelets and Sparsity XIV, 81381X, Proc. SPIE. 2011 Sep; 8138:550-506. doi: 10.1117/12.894241.

10. Lee K, Tak S, Ye JC. A data-driven spatially adaptive generalized linear model for functional MRI analysis. In 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. 2011 Mar; 1027-1030. IEEE. doi: 10.1109/ISBI.2011.5872576.

11. Lee K, Ye JC. Statistical parametric mapping of fMRI data using sparse dictionary learning. In 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. 2010 April; 660-663. IEEE. doi: 10.1109/ISBI.2010.5490090.

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Conference Abstracts

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